VIPER 3.49 B467

Pacific Northwest National Laboratory in Graphic Apps / CAD

VIPER screenshot

User Rating: 0 (0 votes)

VIPER (Visual Inspection of Peak/Elution Relationships) can be used to visualize and characterize the features detected during LC-MS analyses. It is primarily intended for processing deisotoped data from high mass measurement accuracy instruments (e.g. FT, TOF, or Orbitrap) and comparing the features found to a list of expected peptides (aka mass and time (MT) tags), as practiced by the AMT tag approach (see Zimmer, Monroe, Qian, & Smith, Mass Spec Reviews, 2006, 25, 450-482).

The software allows one to display the data as a two-dimensional plot of spectrum number (i.e. elution time) vs. mass. It can read MS data from several file formats: .PEK, .CSV (Decon2LS format), .mzXML, and .mzData. See the Readme.txt file installed with VIPER for additional details on the various file formats. VIPER runs on Windows computers and requires Microsoft Access be installed to create and edit the MT tag databases. In order to view mass spectra from raw data files (e.g. ThermoElectron (i.e. Finnigan style) .Raw files), you will also need to install ICR-2LS found above.

The "Data Extraction and Analysis for LC-MS Based Proteomics" sessions at the 2007 and 2008 US HUPO conferences discussed the use of VIPER for processing example LC-MS datasets and matching to an AMT tag database. PDF files of the slides presented are available for download as a 5 MB PDF file (2007) and a 6.5 MB PDF file (2008). See also the Open Source Tools for the Accurate Mass and Time (AMT) Tag Proteomics Pipeline poster presented by Navdeep Jaitly at ASMS 2006. This poster presents an overview of VIPER and its interactions with other proteomics software. Lastly, a help file in PowerPoint format is also available, but keep in mind that this file is fairly out-of-date on several of the slides. Note also that the MTDB Creator software can be used to generate AMT tag databases in the Microsoft Access file format.

File Size: 18.7001953125 MB License: Freeware Price: FREE
Platform: Windows XP, Windows Vista, Windows Vista x64, Windows 7, Windows 7 x64, Windows 8, Windows 8 x64, Windows 10, Windows 10 x64
Downloads: Total: 10 | This Month: 9 Released: 2012-05-07
VIPER Similar Software

SeqView 1.3 Matthew Leditschke    

... application specially designed to help you view and analyze sequence files with just a few click. You can select to view SEG, RGB, BGR sequences. So, if you needed a bioinformatics tool to help you with sequence analysis, give this tool a try and see if its capabilities are .... Free download of SeqView 1.3

software pick   

Oasys Alp 19.1 SP1 Build Oasys Limited    

... is a complex tool designed to help you analyze the influence of a laterally-loaded pile on the ... easier. You can use the program to analyze the soil behavior under various circumstances. It can handle different ground water pressures, depths and displacements. .... Free download of Oasys Alp 19.1 SP1 Build

Sonnet Lite 15.53 Sonnet Software Inc.     update

Sonnet Lite™ is a free feature-limited version of Sonnet's professional Sonnet Suites, which provides ... high-frequency components and boards depend on Sonnet to analyze their predominantly planar high-frequency designs from 1 MHz ... You can also use Sonnet Lite to analyze planar structures such as: Microstrip matching networks Lossy spiral .... Free download of Sonnet Lite 15.53

DASS-GUI 1.4 J.Hollunder    

... of means and standard deviations of different numerical features, extraction of the underlying closed set hierarchy and ... well as comparison (validation) with pre-defined sets. FEATURES: Calculation Mode: · calculation of significant closed ... means and standard deviations of different · numerical features, · clustering and pruning the closed set results, .... Free download of DASS-GUI 1.4

software award   

ASDN - Agile Supply Demand Networks 1.217 Petri Helo    

"Agile Supply Demand Networks" is software for analyzing and developing logistics networks. This rapid modelling tool should help decision-making in network architecture design and performance management. ASDN software is Open Source and developed by University of Vaasa, Finland and ABB Operations Development Group. .... Free download of ASDN - Agile Supply Demand Networks 1.217

software pick   
Popular Software in Graphic Apps / CAD

Proteus PCB Design 8.9 SP0 B28501 Labcenter Electronics Ltd.     update

A powerful application for circuit board designers. Free download of Proteus PCB Design 8.9 SP0 B28501

Gephi 0.9.2 Mathieu Bastian    

A tool for people that have to explore and understand graphs. Free download of Gephi 0.9.2

software pick   

WellCAD x64 5.3 B625 Advanced Logic Technology     update

Handles a wide range of data type from wire line data. Free download of WellCAD x64 5.3 B625

EAGLE Light 9.5.0 CadSoft Computer     update

Designed specifically for creating printed circuit boards (PCBs). Free download of EAGLE Light 9.5.0

software pick   

VeeCAD 2.39 Release 1 Roger Lascelles     update

A capable layout editor ready for hard work. Free download of VeeCAD 2.39 Release 1

software pick