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OpenBabelGUI 2.4.1 Sourceforge    

... SMARTS and other methods Supports molecular modeling, cheminformatics, bioinformatics Organic chemistry, inorganic chemistry, solid-state materials, nuclear chemistry .... Free download of OpenBabelGUI 2.4.1

software pick   

JDet 1.4.1 Thilo Muth    

JDet is a multiplatform software for the interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures. It contains the set of tools and features we consider critical for the daily work with this kind of data, and that previously were disseminated in different packages and web .... Free download of JDet 1.4.1

Unipro UGENE 1.34.0 Unipro    

... UGENE is a complex computational tool that provides bioinformatics researchers with a new way to process NGS data. Features: Integrated tools Multiple sequence alignment using MUSCLE 3, KAlign, Clustal; HMM profiles build and search, based on the source of HMMER 2 and HMMER 3; PCR Primers design using .... Free download of Unipro UGENE 1.34.0

MZmine 2.52 MZmine Team    

... on the original MZmine toolbox described in 2006 Bioinformatics publication, but has been completely redesigned and rewritten ... initiated by Matej Oreši? of Quantitative Biology and Bioinformatics group at VTT Technical Research Centre of Finland ... paper about MZmine 2 was published in BMC Bioinformatics in 2010. .... Free download of MZmine 2.52

Avogadro 1.2.0 dcurtis3    

... for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science and related areas. It offers a flexible rendering framework and a powerful plugin architecture. Features: * Cross-Platform: Molecular builder for Windows, Linux, and Mac * Free, Open Source: Easy to install and all source code is available .... Free download of Avogadro 1.2.0

Picard 2.20.7 Sourceforge    

Picard comprises Java-based command-line utilities that manipulate SAM files, and a Java API (SAM-JDK) for creating new programs that read and write SAM files. Both SAM text format and SAM binary (BAM) format are supported. A set of Java command line tools for manipulating high-throughput sequencing (HTS) data and formats. .... Free download of Picard 2.20.7

Cytoscape x64 3.7.2 Cytoscape Consortium    

Cytoscape x64 is an open source bioinformatics software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data. Although Cytoscape x64 was originally designed for biological research, now it is a general platform for complex network analysis and .... Free download of Cytoscape x64 3.7.2

Cytoscape for Mac OS X 3.7.2 Cytoscape Consortium    

Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data. Although Cytoscape was originally designed for biological research, now it is a general platform for complex network analysis and visualization. Cytoscape .... Free download of Cytoscape for Mac OS X 3.7.2

Cytoscape for Linux 3.7.2 Cytoscape Consortium    

Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data. Although Cytoscape was originally designed for biological research, now it is a general platform for complex network analysis and visualization. Cytoscape .... Free download of Cytoscape for Linux 3.7.2

Cytoscape 3.7.2 Cytoscape Consortium    

Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data. Although Cytoscape was originally designed for biological research, now it is a general platform for complex network analysis and visualization. Cytoscape .... Free download of Cytoscape 3.7.2

BioRuby 2.0.0 BioRuby Team    

Open source bioinformatics library for Ruby BioRuby is a free library that provides an integrated environment in bioinformatics for the Ruby language. This BioRuby project ... set of free development tools and libraries for bioinformatics and molecular biology, for the Ruby programming language. ... browser. * BioRuby is supported by the Open Bioinformatics Foundation or O|B|F. .... Free download of BioRuby 2.0.0

Advanced Pathway Painter 2.30 GSA    

This freeware program visualizes pathways (KEGG, BioCarta, GenMAPP, ...). The user has the possibility to display any kind of quantitative data from gene and protein experiments directly within the pathways (colours represent the value). The linking between the pathway items and the experiment data is done over the gene or protein .... Free download of Advanced Pathway Painter 2.30

Biopython for Mac OS X 1.66 Biopython.org    

... the needs of current and future work in bioinformatics. The source code is made available under the ... the world. We work along with the Open Bioinformatics Foundation, who generously host our website, bug tracker, and mailing lists. This wiki will help you download and install Biopython, and start using .... Free download of Biopython for Mac OS X 1.66

Biopython for Windows (x64 bit) 1.66 Biopython.org    

... the needs of current and future work in bioinformatics. The source code is made available under the ... the world. We work along with the Open Bioinformatics Foundation, who generously host our website, bug tracker, and mailing lists. This wiki will help you download and install Biopython, and start using .... Free download of Biopython for Windows (x64 bit) 1.66

Biopython for Windows (x32 bit) 1.66 Biopython.org    

... the needs of current and future work in bioinformatics. The source code is made available under the ... the world. We work along with the Open Bioinformatics Foundation, who generously host our website, bug tracker, and mailing lists. This wiki will help you download and install Biopython, and start using .... Free download of Biopython for Windows (x32 bit) 1.66

USeq 8.9.6 Robb Cundick&David Nix    

... at the Huntsman Cancer Institute in the Utah Bioinformatics Shared Resource Center. A description of the statistics and comparison of methods used in USeq is now published, see Nix DA, Courdy SJ, Boucher KM: Empirical methods for controlling false positives and estimating confidence in chIP-seq peaks. .... Free download of USeq 8.9.6

Graphviz for Linux 2.39.20150720 Pixelglow Software    

... and networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual interfaces for other technical domains. The Graphviz layout programs take descriptions of graphs in a simple text language, and make diagrams in useful formats, such as images and SVG .... Free download of Graphviz for Linux 2.39.20150720

Graphviz 2.38 Pixelglow Software    

... and networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual interfaces for other technical domains. The Graphviz layout programs take descriptions of graphs in a simple text language, and make diagrams in useful formats, such as images and SVG .... Free download of Graphviz 2.38

Graphviz for Mac OS X 2.39.20150720 Pixelglow Software    

... and networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual interfaces for other technical domains. The Graphviz layout programs take descriptions of graphs in a simple text language, and make diagrams in useful formats, such as images and SVG .... Free download of Graphviz for Mac OS X 2.39.20150720

Chemistry Development Kit 1.5.6 Dev The CDK Project    

Chemistry Development Kit is now developed by more than 40 developers all over the world and used in more than 10 different academic as well as industrial projects world wide. In the past four years, the CDK library evolved into a fully blown chemoinformatics package with code reaching from QSAR .... Free download of Chemistry Development Kit 1.5.6 Dev

Seq Monk 0.24.1 Babraham Bioinformatics    

SeqMonk is a powerful application designed to enable you to visualize and analyze mapped sequence data. It was written for use with mapped next generation sequence data but can in theory be used for any dataset which can be expressed as a series of genomic positions. Features: · .... Free download of Seq Monk 0.24.1

Geneious PRO x64 6.0.4 Biomatters Ltd    

Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring ... public data as it downloads. More... Teach Bioinformatics: * Create interactive tutorials with direct links to material in Geneious * All the tools a budding bioinformatician may need is just a click away .... Free download of Geneious PRO x64 6.0.4

software pick   

Geneious PRO 6.0.4 Biomatters Ltd    

Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring ... public data as it downloads. More... Teach Bioinformatics: * Create interactive tutorials with direct links to material in Geneious * All the tools a budding bioinformatician may need is just a click away .... Free download of Geneious PRO 6.0.4

software pick   

Geneious Basic x64 6.0.4 Biomatters Ltd    

... data that allows any molecular biologist do core bioinformatics tasks in a flash by removing painful data-administration. Geneious comes pre-bundled with bioinformatics functions from publication or nucleotide searching through to ... cutting and pasting sequences. It contains all core bioinformatics functions in an integrated workflow. Because Geneious ... speed and sophistication of their research by using bioinformatics approaches, but doesn't necessarily expect to be a .... Free download of Geneious Basic x64 6.0.4

software pick   

Geneious Basic 6.0.4 Biomatters Ltd    

... data that allows any molecular biologist do core bioinformatics tasks in a flash by removing painful data-administration. Geneious comes pre-bundled with bioinformatics functions from publication or nucleotide searching through to ... cutting and pasting sequences. It contains all core bioinformatics functions in an integrated workflow. Because Geneious ... speed and sophistication of their research by using bioinformatics approaches, but doesn't necessarily expect to be a .... Free download of Geneious Basic 6.0.4

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