JDet 1.4.0 Thilo Muth    

... programs for extracting this kind of information from protein alignments. This software has been developed by Thilo Muth and Juan Antonio Garcia under the guidance of Florencio Pazos. .... Free download of JDet 1.4.0

CLC Main Workbench 5.5.0 CLC bio    

... gene expression analysis with all features of CLC Protein Workbench, CLC RNA Workbench, and CLC DNA Workbench ... a large number of advanced DNA, RNA, and protein sequence analyses, combined with gene expression analysis, smooth data management, and excellent graphical viewing and output options. CLC Main Workbench is available on .... Free download of CLC Main Workbench 5.5.0

software pick   

ProteinID Finder 1.8.2 Proteome Solutions    

ProteinID Finder imports your mass spectrometer analyzed protein lists (uniprot accession numbers) into experiments and organizes ... so everyone is working on the same data. ProteinID Finder can compare multiple experiments and identify trends ... powerful tool to identify potential biomarkers. Give ProteinID Finder a try to see just how useful ... Experiments: · Add your mass spectrometer analyzed protein lists into experiments. Workspaces: · Create and organize .... Free download of ProteinID Finder 1.8.2

Advanced Pathway Painter 2.29 GSA    

... any kind of quantitative data from gene and protein experiments directly within the pathways (colours represent the ... experiment data is done over the gene or protein names and their accession numbers. Furthermore the user has a quick overview on the gene/protein with the collected links in the web-interface (direct links). .... Free download of Advanced Pathway Painter 2.29

Unipro UGENE 1.14.0 Unipro    

... a free visual software solution for DNA and protein sequence analysis. UGENE provides customizable tools for visualization, ... capabilities; Queries to NCBI BLAST and CDD databases; Protein secondary structure prediction using GOR IV and PSIPRED; ... Search for transcription factor binding sites using SITECON; Protein back translation; ORF finder; Complete Smith-Waterman algorithm implementation; .... Free download of Unipro UGENE 1.14.0

Unipro UGENE for Mac 1.12.2 Unipro    

... a free visual software solution for DNA and protein sequence analysis. UGENE provides customizable tools for visualization, ... capabilities; Queries to NCBI BLAST and CDD databases; Protein secondary structure prediction using GOR IV and PSIPRED; ... Search for transcription factor binding sites using SITECON; Protein back translation; ORF finder; Complete Smith-Waterman algorithm implementation; .... Free download of Unipro UGENE for Mac 1.12.2

Unipro UGENE for Linux 1.12.2 Unipro    

... a free visual software solution for DNA and protein sequence analysis. UGENE provides customizable tools for visualization, ... capabilities; Queries to NCBI BLAST and CDD databases; Protein secondary structure prediction using GOR IV and PSIPRED; ... Search for transcription factor binding sites using SITECON; Protein back translation; ORF finder; Complete Smith-Waterman algorithm implementation; .... Free download of Unipro UGENE for Linux 1.12.2

DASher 1.3.4 Stockholm Bioinformatics Centre    

... Java DAS client for displaying annotations on a protein sequence. Enter a protein ID and DASher automatically gathers information about it ... found at the registry, but how many contain protein features (and thus will be displayed by DASher). .... Free download of DASher 1.3.4

Kappa 4.321.10549 kappamodeler    

... A domain-specific language that allows the expression or protein interactions that can be used to build executable models. .... Free download of Kappa 4.321.10549

AltAnalyze 2.02 Beta Nathan Salomonis & Bruce Conklin    

... changes and view how these changes may affect protein sequence, domain composition, and microRNA targeting. AltAnalyze is compatible with any RNASeq data that can be aligned to junctions, several Affymetrix splicing sensitive array types (Gene 1.0, Exon 1.0, junction) as well as many conventional array-types (e.g., Affymetrix, Illumina, .... Free download of AltAnalyze 2.02 Beta

software pick   

AltAnalyze x64 2.02 Beta Nathan Salomonis & Bruce Conklin    

... changes and view how these changes may affect protein sequence, domain composition, and microRNA targeting. AltAnalyze is compatible with any RNASeq data that can be aligned to junctions, several Affymetrix splicing sensitive array types (Gene 1.0, Exon 1.0, junction) as well as many conventional array-types (e.g., Affymetrix, Illumina, .... Free download of AltAnalyze x64 2.02 Beta

software pick   

AltAnalyze for Mac OS X 2.02 Beta Nathan Salomonis & Bruce Conklin    

... changes and view how these changes may affect protein sequence, domain composition, and microRNA targeting. AltAnalyze is compatible with any RNASeq data that can be aligned to junctions, several Affymetrix splicing sensitive array types (Gene 1.0, Exon 1.0, junction) as well as many conventional array-types (e.g., Affymetrix, Illumina, .... Free download of AltAnalyze for Mac OS X 2.02 Beta

software pick   

AltAnalyze for Linux 2.02 Beta Nathan Salomonis & Bruce Conklin    

... changes and view how these changes may affect protein sequence, domain composition, and microRNA targeting. AltAnalyze is compatible with any RNASeq data that can be aligned to junctions, several Affymetrix splicing sensitive array types (Gene 1.0, Exon 1.0, junction) as well as many conventional array-types (e.g., Affymetrix, Illumina, .... Free download of AltAnalyze for Linux 2.02 Beta

software pick   

Zeus 1.5 KryptonScientific    

A powerful molecular visualisation tool supporting PDB/Brookhaven, MOL, MOL2/SYBYL and XYZ file formats. It incorporates a sophisticated rendering engine that can output very high quality molecular graphics. Zeus incorporates Sequence Search/Highlighting within the molecular structure with Wildcard capability. A residue keypad allows easy entry of sequences. PDB files can be automatically .... Free download of Zeus 1.5

Geneious PRO 6.0.4 Biomatters Ltd    

... exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features ... and cloning, access to NCBI and UniProt, BLAST, protein structure viewing, automated PubMed searching, and more. It ... and MrBayes * Consensus sequence, translation, complement and protein statistics update as you edit * Find motifs, .... Free download of Geneious PRO 6.0.4

software pick   

Geneious PRO x64 6.0.4 Biomatters Ltd    

... exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features ... and cloning, access to NCBI and UniProt, BLAST, protein structure viewing, automated PubMed searching, and more. It ... and MrBayes * Consensus sequence, translation, complement and protein statistics update as you edit * Find motifs, .... Free download of Geneious PRO x64 6.0.4

software pick   

GProX 1.1.13 Kristoffer    

... of-the-fly Enrichment Analysis: · Test for over-represented protein features · Select from several statistical approaches · Analyze protein annotations in clusters · Special features for GO term analysis Cluster protein regulation: · Partition proteins into clusters · Wide range of parameters for .... Free download of GProX 1.1.13

MassWiz 1.7.4.1 Dhirendra Kumar    

... with integrated target-decoy based FDR. It helps in protein identification from tandem mass spectrometry data. It features proteomics, mass spectrometry, target-decoy search, FDR calculation, specificity, algorithm, and sensitivity. Features proteomics mass spectrometry target-decoy search FDR calculation specificity algorithm sensitivity .... Free download of MassWiz 1.7.4.1

MassWiz 64-bit 1.7.4.1 Dhirendra Kumar    

... with integrated target-decoy based FDR. It helps in protein identification from tandem mass spectrometry data. It features proteomics, mass spectrometry, target-decoy search, FDR calculation, specificity, algorithm, and sensitivity. Features proteomics mass spectrometry target-decoy search FDR calculation specificity algorithm sensitivity .... Free download of MassWiz 64-bit 1.7.4.1

Coloring Book 19: Eating Healthy 1.00.06 Dataware     update

... of the food groups - grains, vegetables, fruits, protein, and dairy. The foods then unite by showing how they can transform into healthy meals and snacks. But watch out! The nutritious foods are ambushed by unhealthy snacks and candy. However, in the end, the unhealthy bad guys reconcile with the .... Free download of Coloring Book 19: Eating Healthy 1.00.06

RasMol 2.7.5 Roger Sayle    

... molecular graphics program intended for the visualisation of proteins, nucleic acids and small molecules. The program is ... and colour schemes. Supported input file formats include Protein Data Bank (PDB), Tripos Associates' Alchemy and Sybyl Mol2 formats, Molecular Design Limited's (MDL) Mol file format, Minnesota Supercomputer Center's (MSC) XYZ (XMol) format, .... Free download of RasMol 2.7.5

software award    software pick   

Melanie 7.05 Swiss Institute of Bioinformatics    

... to shorten the path from data acquisition to protein information, both for conventional 2-DE and DIGE (Fluorescence ... researchers analyze their 2-D electrophoresis gels to identify protein markers of interest. It avoids inaccuracies due to ... tasks. It helps reduce time spent finding significant protein expression changes and increases the reliability of the .... Free download of Melanie 7.05

software pick   

Facio 16.2.1 Masahiko Suenaga    

... display a 3D-structure of biological macromolecules, such as proteins and nucleic acid with emphasizing their secondary or ... structure format is PDB (Protein Data Bank). Thus, protein or nucleic acid data in PDB format is loadable to Facio. In the former version, Facio sometimes collapsed with fatal exception. This fatal bug .... Free download of Facio 16.2.1

Unipro UGENE 64-bit 1.14.0 Unipro    

... a free visual software solution for DNA and protein sequence analysis. UGENE provides customizable tools for visualization, ... capabilities; Queries to NCBI BLAST and CDD databases; Protein secondary structure prediction using GOR IV and PSIPRED; ... Search for transcription factor binding sites using SITECON; Protein back translation; ORF finder; Complete Smith-Waterman algorithm implementation; .... Free download of Unipro UGENE 64-bit 1.14.0

CLC Sequence Viewer 6.8.1 CLC bio    

... Viewer Multiple alignment of DNA, RNA, and proteins Two proprietary algorithms ClustalW Muscle T-Coffee MAFFT Kalign ... Open reading frame determination Easy access to web-based protein and nucleotide search in GenBank, including download facilities ... annotations of your choice Translation from DNA to proteins (all genetic translation tables) Reports with residue composition, .... Free download of CLC Sequence Viewer 6.8.1

protein web results